Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0816Kinase domain protein; Identified by match to protein family HMM PF00069. (332 aa)    
Predicted Functional Partners:
MALL_0815
Conserved hypothetical protein.
 
 
 0.998
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
  
  
 0.925
pstA
Phosphate ABC transporter, permease protein PstA; Identified by match to protein family HMM PF00528.
    
  0.867
MALL_0818
Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834.
  
  
 0.853
gmk
Guanylate kinase; Identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263.
       0.838
hprK
HPr(Ser) kinase/phosphatase; Identified by match to protein family HMM PF02603; match to protein family HMM PF07475; Belongs to the HPrK/P family.
   
 
 0.689
MALL_0813
Ion channel; Identified by match to protein family HMM PF00520; match to protein family HMM PF07885.
  
  
 0.675
MALL_0257
Phosphotransferase system, EIIB; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM TIGR00830.
  
 
 0.647
MALL_0707
PTS system, glucose-like IIB component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830.
  
 
 0.647
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
 
 0.613
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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