Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0818Ribulose-phosphate 3-epimerase; Identified by match to protein family HMM PF00834. (216 aa)    
Predicted Functional Partners:
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
  
 0.981
MALL_0700
Putative transketolase; Identified by match to protein family HMM PF00456; match to protein family HMM PF02779; Belongs to the transketolase family.
 
 0.976
MALL_0575
Sugar-phosphate isomerase, RpiB/LacA/LacB family; Identified by match to protein family HMM PF02502; match to protein family HMM TIGR00689.
  
 
 0.900
gmk
Guanylate kinase; Identified by match to protein family HMM PF00625; match to protein family HMM TIGR03263.
  
  
 0.868
MALL_0816
Kinase domain protein; Identified by match to protein family HMM PF00069.
  
  
 0.853
MALL_0815
Conserved hypothetical protein.
  
    0.837
MALL_0103
Putative 2-deoxy-D-gluconate 3-dehydrogenase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00106.
  
 
 0.823
MALL_0645
Conserved domain protein.
  
 
 0.706
MALL_0004
Kinase, PfkB family; Identified by match to protein family HMM PF00294.
  
 0.691
MALL_0105
Hypothetical protein; Identified by glimmer; putative.
  
 0.691
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.