| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MALL_0208 | MALL_0837 | MALL_0208 | MALL_0837 | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | 0.822 |
| MALL_0208 | MALL_0838 | MALL_0208 | MALL_0838 | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase Rpb1, domain 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.808 |
| MALL_0208 | MALL_0839 | MALL_0208 | MALL_0839 | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase Rpb1, domain 5; Identified by match to protein family HMM PF04998; match to protein family HMM PF05000. | 0.822 |
| MALL_0208 | rpoA | MALL_0208 | MALL_0328 | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.912 |
| MALL_0208 | rpoB | MALL_0208 | MALL_0836 | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
| MALL_0208 | rpsB | MALL_0208 | MALL_0029 | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.451 |
| MALL_0208 | topA | MALL_0208 | MALL_0160 | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.568 |
| MALL_0837 | MALL_0208 | MALL_0837 | MALL_0208 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.822 |
| MALL_0837 | MALL_0838 | MALL_0837 | MALL_0838 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | RNA polymerase Rpb1, domain 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.987 |
| MALL_0837 | MALL_0839 | MALL_0837 | MALL_0839 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | RNA polymerase Rpb1, domain 5; Identified by match to protein family HMM PF04998; match to protein family HMM PF05000. | 0.976 |
| MALL_0837 | greA | MALL_0837 | MALL_0273 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | Putative transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.797 |
| MALL_0837 | nusG | MALL_0837 | MALL_0565 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | NusG family protein; Participates in transcription elongation, termination and antitermination. | 0.818 |
| MALL_0837 | rplA | MALL_0837 | MALL_0687 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.813 |
| MALL_0837 | rpoA | MALL_0837 | MALL_0328 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.965 |
| MALL_0837 | rpoB | MALL_0837 | MALL_0836 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| MALL_0837 | rpsB | MALL_0837 | MALL_0029 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | Ribosomal protein S2; Identified by match to protein family HMM PF00318; match to protein family HMM TIGR01011; Belongs to the universal ribosomal protein uS2 family. | 0.653 |
| MALL_0837 | topA | MALL_0837 | MALL_0160 | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | DNA topoisomerase; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA superc [...] | 0.918 |
| MALL_0838 | MALL_0208 | MALL_0838 | MALL_0208 | RNA polymerase Rpb1, domain 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.808 |
| MALL_0838 | MALL_0837 | MALL_0838 | MALL_0837 | RNA polymerase Rpb1, domain 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase Rpb1, domain 1; Identified by match to protein family HMM PF04997. | 0.987 |
| MALL_0838 | MALL_0839 | MALL_0838 | MALL_0839 | RNA polymerase Rpb1, domain 2; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA polymerase Rpb1, domain 5; Identified by match to protein family HMM PF04998; match to protein family HMM PF05000. | 0.976 |
