Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0840F5/8 type C domain protein; Identified by match to protein family HMM PF00754; match to protein family HMM PF07555. (1690 aa)    
Predicted Functional Partners:
MALL_0257
Phosphotransferase system, EIIB; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM TIGR00830.
  
  
 0.897
MALL_0707
PTS system, glucose-like IIB component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830.
  
  
 0.897
MALL_0378
F5/8 type C domain protein; Identified by match to protein family HMM PF00728; match to protein family HMM PF00754.
 
     0.852
MALL_0755
BNR/Asp-box repeat protein; Identified by match to protein family HMM PF02012.
 
 0.775
MALL_0641
BNR/Asp-box repeat protein; Identified by match to protein family HMM PF02012.
 
 0.670
MALL_0839
RNA polymerase Rpb1, domain 5; Identified by match to protein family HMM PF04998; match to protein family HMM PF05000.
       0.441
MALL_0841
Hyaluronoglucosaminidase; Identified by match to protein family HMM PF07555.
 
    
0.425
MALL_0116
Hypothetical protein; Identified by glimmer; putative.
  
     0.400
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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