STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFQ07853.1MATE domain protein; KEGG: lsp:Bsph_1859 5.2e-05 hypothetical protein; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Psort location: CytoplasmicMembrane, score: 10.00. (214 aa)    
Predicted Functional Partners:
EFQ06929.1
MATE efflux family protein.
  
     0.661
EFQ07852.1
DNA-binding helix-turn-helix protein; KEGG: cja:CJA_3717 0.0050 dam; adenine-specific DNA methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.601
EFQ05572.1
KEGG: rlt:Rleg2_4805 3.1e-31 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.552
EFQ07854.1
Hypothetical protein.
       0.449
EFQ07851.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
       0.423
EFQ07948.1
KEGG: rlt:Rleg2_4805 1.5e-43 MATE efflux family protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.415
gap
KEGG: cbk:CLL_A3066 1.7e-140 gap; glyceraldehyde-3-phosphate dehydrogenase, type I K00134; Psort location: Cytoplasmic, score: 9.97.
   
    0.412
Your Current Organism:
Faecalibacterium prausnitzii KLE1255
NCBI taxonomy Id: 748224
Other names: F. cf. prausnitzii KLE1255, Faecalibacterium cf. prausnitzii KLE1255, Faecalibacterium cf. prausnitzii str. KLE1255, Faecalibacterium cf. prausnitzii strain KLE1255
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.