Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sirBInvasion gene expression up-regulator. (131 aa)    
Predicted Functional Partners:
AZKH_3208
Hypothetical protein.
 
     0.877
AZKH_3210
Transcriptional regulator, Crp/Fnr family.
       0.567
prmA
Ribosomal protein L11 methyltransferase; Belongs to the methyltransferase superfamily.
  
    0.561
hemK
Protein-glutamine N-methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
    0.561
hemX
uroporphyrin-III C-methyltransferase.
  
     0.436
AZKH_2416
Hypothetical protein.
 
     0.419
Your Current Organism:
Azoarcus sp. KH32C
NCBI taxonomy Id: 748247
Other names: A. sp. KH32C
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