glnP-4 protein (Azoarcus sp. KH32C) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

glnP-4

Polar amino acid transport system permease protein. (217 aa)

Predicted Functional Partners:

glnQ-2

0.984

glnP-3

0.982

argT

0.979

glnH-2

0.977

glnQ

0.929

gltL-2

0.928

gltL

0.927

glnH

0.910

hisP

0.774

gltI

0.736

Your Current Organism:

Azoarcus sp. KH32C

NCBI taxonomy Id: 748247
Other names: A. sp. KH32C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
argT	glnH	AZKH_1563	AZKH_1907	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.746
argT	glnP-3	AZKH_1563	AZKH_3347	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid transport system permease protein.	0.953
argT	glnP-4	AZKH_1563	AZKH_3348	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid transport system permease protein.	0.979
argT	glnQ	AZKH_1563	AZKH_1910	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Putative glutamine transport system ATP-binding protein.	0.866
argT	glnQ-2	AZKH_1563	AZKH_3349	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamine transport ATP-binding protein.	0.856
argT	gltI	AZKH_1563	AZKH_0087	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Putative ABC transporter, glutamate receptor.	0.400
argT	gltL	AZKH_1563	AZKH_0090	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter protein, ATP-binding component.	0.861
argT	gltL-2	AZKH_1563	AZKH_3049	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamate/aspartate ABC transporter ATP-binding protein.	0.864
argT	hisP	AZKH_1563	AZKH_1566	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	hisP, histidine transport system ATP-binding protein.	0.978
glnH	argT	AZKH_1907	AZKH_1563	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Extracellular solute-binding protein family 3, lysine/arginine/ornithine transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 3 family.	0.746
glnH	glnP-3	AZKH_1907	AZKH_3347	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid transport system permease protein.	0.879
glnH	glnP-4	AZKH_1907	AZKH_3348	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid transport system permease protein.	0.910
glnH	glnQ	AZKH_1907	AZKH_1910	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Putative glutamine transport system ATP-binding protein.	0.993
glnH	glnQ-2	AZKH_1907	AZKH_3349	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamine transport ATP-binding protein.	0.874
glnH	gltL	AZKH_1907	AZKH_0090	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	ABC transporter protein, ATP-binding component.	0.878
glnH	gltL-2	AZKH_1907	AZKH_3049	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Glutamate/aspartate ABC transporter ATP-binding protein.	0.878
glnH	hisP	AZKH_1907	AZKH_1566	Glutamine ABC transporter, periplasmic amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.	hisP, histidine transport system ATP-binding protein.	0.771
glnH-2	glnP-3	AZKH_3346	AZKH_3347	Glutamine ABC transporter, periplasmic, glutamine-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid transport system permease protein.	0.962
glnH-2	glnP-4	AZKH_3346	AZKH_3348	Glutamine ABC transporter, periplasmic, glutamine-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Polar amino acid transport system permease protein.	0.977
glnH-2	glnQ	AZKH_3346	AZKH_1910	Glutamine ABC transporter, periplasmic, glutamine-binding protein; Belongs to the bacterial solute-binding protein 3 family.	Putative glutamine transport system ATP-binding protein.	0.798