STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_0021ABC transporter, permease protein. (256 aa)    
Predicted Functional Partners:
NH8B_0022
ABC transporter, ATP-binding protein.
 
  
 0.963
NH8B_3630
ABC transporter, ATP-binding protein.
 
  
 0.745
NH8B_2591
ABC transporter, ATP-binding protein.
 
  
 0.685
NH8B_3018
ABC-2 type transporter, NodJ family.
  
  
  0.683
NH8B_3448
ABC transporter, ATP-binding protein.
 
  
 0.645
NH8B_3954
ABC transporter, ATP-binding protein.
 
  
 0.570
NH8B_2754
ABC transporter, ATP-binding/permease protein.
  
 
 0.544
NH8B_0023
Amino acid permease.
       0.511
NH8B_3629
ABC-2 type transporter, permease protein.
  
  
 
0.510
NH8B_1375
ABC transporter, ATP-binding protein.
 
  
 0.504
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.