STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_0022ABC transporter, ATP-binding protein. (270 aa)    
Predicted Functional Partners:
NH8B_0021
ABC transporter, permease protein.
 
  
 0.963
NH8B_2989
ABC-2 type transporter.
  
 0.841
nosY
Transmembrane protein NosY.
  
 
 0.782
NH8B_3629
ABC-2 type transporter, permease protein.
 
  
 0.686
NH8B_3018
ABC-2 type transporter, NodJ family.
 
  
 0.520
NH8B_0023
Amino acid permease.
       0.511
NH8B_3632
Transcriptional regulator NosR.
  
  
 0.477
nosD
Copper ABC transporter, periplasmic copper-binding protein NosD.
 
 
 0.475
nosL
Nitrous oxide reductase accessory protein NosL.
  
 
 0.469
atpD
F0F1 ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.458
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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