STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_0044RND efflux system, outer membrane lipoprotein. (467 aa)    
Predicted Functional Partners:
mdtA
Multidrug efflux system subunit MdtA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.975
mdtB
Multidrug efflux system subunit MdtB; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.949
mdtC
Multidrug efflux system subunit MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.940
acrB-3
Cation/multidrug efflux pump AcrB.
 
 0.811
acrA-3
Cation/multidrug efflux system, membrane-fusion protein AcrA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.809
macB
ABC transporter, ATP-binding/permease protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.807
NH8B_2721
Multidrug resistance protein A.
 
 
 0.723
NH8B_3734
Multidrug resistance protein A.
 
 
 0.714
NH8B_2351
Multidrug resistance protein A.
 
 
 0.700
NH8B_2188
RND efflux system, membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.670
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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