STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_0298FxsA cytoplasmic membrane protein. (140 aa)    
Predicted Functional Partners:
hslV
Heat shock protein HslVU, ATP-dependent protease HslV; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.
   
    0.835
NH8B_3090
20S proteasome A and B subunits.
  
    0.795
NH8B_2402
Amidohydrolase 3.
  
    0.790
NH8B_0299
CutA1 divalent ion tolerance protein.
     
 0.710
NH8B_0790
Hypothetical protein.
  
     0.616
hslU
Heat shock protein HslVU, ATPase subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.
   
    0.598
NH8B_1281
Protein of unknown function; DUF945.
  
     0.585
NH8B_1097
Hypothetical protein.
  
     0.542
NH8B_2765
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
   
    0.513
NH8B_3721
Heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
   
    0.513
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.