STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_0809Cupin 4 family protein. (377 aa)    
Predicted Functional Partners:
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.878
slyD
FKBP-type peptidyl-prolyl cis-trans isomerase; K03775.
       0.593
NH8B_0810
Hypothetical protein.
       0.566
NH8B_1040
Oxidoreductase, 2OG-Fe(II) oxygenase family.
 
     0.506
NH8B_2323
Protein of unknown function; DUF1415.
  
     0.493
NH8B_0862
DoxX family protein.
  
    0.488
NH8B_2625
Protein of unknown function; DUF615; Belongs to the UPF0307 family.
  
     0.438
argS
arginyl-tRNA synthetase; K01887.
   
    0.429
NH8B_1282
Fatty acid desaturase.
  
     0.403
ppiC-3
PpiC-type peptidyl-prolyl cis-trans isomerase; K03770.
  
     0.402
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.