STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcpType VI secretion system effector, Hcp1 family. (165 aa)    
Predicted Functional Partners:
impB
Type VI secretion protein ImpB.
 
 
 0.996
impC
Type VI secretion protein EvpB/ImpC.
 
 
 0.990
impH
Type VI secretion protein ImpH.
 
  
 0.969
vgrG
Type VI secretion system Vgr family protein.
 
  
 0.943
icmF
Type VI secretion protein IcmF.
 
  
 0.918
impG
Type VI secretion protein ImpG.
 
  
 0.903
NH8B_1779
Phage-related baseplate assembly protein.
  
  
 0.889
impJ
Type VI secretion protein ImpJ.
 
  
 0.883
clpV
Type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
 
  
 0.880
impF
Type VI secretion system lysozyme-related protein.
 
  
 0.876
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.