STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_1356Transcriptional regulator, AraC family. (319 aa)    
Predicted Functional Partners:
NH8B_1354
Oxidoreductase domain protein.
 
    0.643
NH8B_1323
Transcriptional regulator, AraC family.
  
     0.637
NH8B_1340
Transcriptional regulator, AraC family.
 
 
 0.631
NH8B_1404
Transcriptional regulator, AraC family.
 
 
 0.622
NH8B_1355
ThuA family protein.
 
     0.609
NH8B_3767
Transcriptional regulator, AraC family.
  
     0.575
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.520
NH8B_1357
Dienelactone hydrolase.
  
    0.466
NH8B_1139
Transcriptional regulator, LacI family.
  
  
 0.408
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.