STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirJHeme d1 biosynthesis protein NirJ. (401 aa)    
Predicted Functional Partners:
nirN
Cytochrome d1 heme region NirN.
 
  
 0.978
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
 
 0.914
nirC
Cytochrome c class I NirC.
 
  
 0.881
nirG
Heme d1 biosynthesis protein NirH/G (nirD/L) homolog.
 
  
 0.871
nirH
Heme d1 biosynthesis protein NirH/G (nirD/L) homolog.
  
 0.868
nirF
Heme d1 biosynthesis protein NirF.
 
  
 0.838
nirS
Nitrite reductase (NO-forming) NirS; K00368.
 
  
 0.825
norB
Nitric-oxide reductase subunit B NorB; K04561; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.752
norC
Nitric-oxide reductase subunit C NorC; K02305.
 
  
 0.720
NH8B_3632
Transcriptional regulator NosR.
 
  
 0.618
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.