Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
NH8B_0542 | NH8B_0545 | Phage tail protein I. | Phage late control gene D protein GpD. | 0.993 |
NH8B_0542 | NH8B_0550 | Phage tail protein I. | Phage major tail tube protein. | 0.993 |
NH8B_0542 | NH8B_1767 | Phage tail protein I. | Tail sheath protein. | 0.854 |
NH8B_0542 | NH8B_1778 | Phage tail protein I. | Hypothetical protein. | 0.883 |
NH8B_0542 | NH8B_1781 | Phage tail protein I. | GPW/gp25 family protein. | 0.942 |
NH8B_0545 | NH8B_0542 | Phage late control gene D protein GpD. | Phage tail protein I. | 0.993 |
NH8B_0545 | NH8B_0550 | Phage late control gene D protein GpD. | Phage major tail tube protein. | 0.984 |
NH8B_0545 | NH8B_1767 | Phage late control gene D protein GpD. | Tail sheath protein. | 0.883 |
NH8B_0545 | NH8B_1768 | Phage late control gene D protein GpD. | Phage tail protein. | 0.829 |
NH8B_0545 | NH8B_1777 | Phage late control gene D protein GpD. | Hypothetical protein. | 0.747 |
NH8B_0545 | NH8B_1781 | Phage late control gene D protein GpD. | GPW/gp25 family protein. | 0.966 |
NH8B_0545 | NH8B_1782 | Phage late control gene D protein GpD. | Putative phage tail region protein. | 0.863 |
NH8B_0550 | NH8B_0542 | Phage major tail tube protein. | Phage tail protein I. | 0.993 |
NH8B_0550 | NH8B_0545 | Phage major tail tube protein. | Phage late control gene D protein GpD. | 0.984 |
NH8B_0550 | NH8B_1767 | Phage major tail tube protein. | Tail sheath protein. | 0.862 |
NH8B_0550 | NH8B_1778 | Phage major tail tube protein. | Hypothetical protein. | 0.864 |
NH8B_0550 | NH8B_1781 | Phage major tail tube protein. | GPW/gp25 family protein. | 0.928 |
NH8B_1767 | NH8B_0542 | Tail sheath protein. | Phage tail protein I. | 0.854 |
NH8B_1767 | NH8B_0545 | Tail sheath protein. | Phage late control gene D protein GpD. | 0.883 |
NH8B_1767 | NH8B_0550 | Tail sheath protein. | Phage major tail tube protein. | 0.862 |
page 1 of 5