STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_1841Putative ferredoxin protein. (109 aa)    
Predicted Functional Partners:
nuoE
NADH dehydrogenase (ubiquinone), E subunit; K00334.
 
 
 0.832
nuoM
NADH dehydrogenase (ubiquinone), M subunit; K00342.
  
  
 0.827
NH8B_2126
Formate dehydrogenase, gamma subunit; K00127.
 
 
 0.820
NH8B_1842
High-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family.
       0.801
cobN
Cobaltochelatase, CobN subunit; K02230.
 
     0.780
chlD
Cobaltochelatase subunit; K03404.
       0.764
NH8B_1221
Formate dehydrogenase, alpha subunit; K00123; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.752
NH8B_1475
Assimilatory nitrate reductase (NADH), alpha subunit; K00372; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.752
NH8B_2071
Formate dehydrogenase, alpha subunit; K00123; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.752
NH8B_2124
Formate dehydrogenase, alpha subunit; K00123.
  
 
 0.752
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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