NH8B_2011 protein (Pseudogulbenkiania sp. NH8B)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NH8B_2011

3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; K07516. (788 aa)

Predicted Functional Partners:

NH8B_1485

0.999

NH8B_2008

0.999

NH8B_2498

0.999

NH8B_2630

0.999

NH8B_2779

0.999

NH8B_0039

0.962

NH8B_1995

0.962

NH8B_2945

0.962

NH8B_2631

0.956

NH8B_2010

0.946

Your Current Organism:

Pseudogulbenkiania sp. NH8B

NCBI taxonomy Id: 748280
Other names: P. sp. NH8B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NH8B_0039	NH8B_1485	acetoacetyl-CoA synthase; K01907.	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	0.929
NH8B_0039	NH8B_1995	acetoacetyl-CoA synthase; K01907.	acetoacetyl-CoA synthetase; K01907.	0.907
NH8B_0039	NH8B_2008	acetoacetyl-CoA synthase; K01907.	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	0.929
NH8B_0039	NH8B_2011	acetoacetyl-CoA synthase; K01907.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; K07516.	0.962
NH8B_0039	NH8B_2631	acetoacetyl-CoA synthase; K01907.	3-hydroxyacyl-CoA dehydrogenase, NAD-binding; K07516.	0.962
NH8B_0039	NH8B_2779	acetoacetyl-CoA synthase; K01907.	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	0.929
NH8B_0039	NH8B_2945	acetoacetyl-CoA synthase; K01907.	acetoacetyl-CoA synthase; K01907.	0.902
NH8B_1485	NH8B_0039	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	acetoacetyl-CoA synthase; K01907.	0.929
NH8B_1485	NH8B_1995	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	acetoacetyl-CoA synthetase; K01907.	0.929
NH8B_1485	NH8B_2008	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	0.905
NH8B_1485	NH8B_2010	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	acyl-CoA dehydrogenase domain protein; K00249.	0.485
NH8B_1485	NH8B_2011	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase; K07516.	0.999
NH8B_1485	NH8B_2498	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	Beta-ketoadipyl CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.	0.907
NH8B_1485	NH8B_2630	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; K00632; Belongs to the thiolase-like superfamily. Thiolase family.	0.914
NH8B_1485	NH8B_2631	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	3-hydroxyacyl-CoA dehydrogenase, NAD-binding; K07516.	0.999
NH8B_1485	NH8B_2779	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	0.906
NH8B_1485	NH8B_2945	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	acetoacetyl-CoA synthase; K01907.	0.929
NH8B_1995	NH8B_0039	acetoacetyl-CoA synthetase; K01907.	acetoacetyl-CoA synthase; K01907.	0.907
NH8B_1995	NH8B_1485	acetoacetyl-CoA synthetase; K01907.	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	0.929
NH8B_1995	NH8B_2008	acetoacetyl-CoA synthetase; K01907.	acetyl-CoA acetyltransferase; K00626; Belongs to the thiolase-like superfamily. Thiolase family.	0.929