Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_2016Hypothetical protein. (171 aa)    
Predicted Functional Partners:
NH8B_3364
Acyltransferase 3.
  
     0.701
NH8B_1385
ComEA-like protein.
 
     0.691
NH8B_2406
Protein of unknown function; DUF1275.
  
     0.634
NH8B_2159
Protein of unknown function; DUF2339.
  
     0.631
NH8B_1812
Hypothetical protein.
  
     0.608
NH8B_1128
Protein of unknown function; DUF2235.
  
     0.582
NH8B_2655
Hypothetical protein.
  
     0.581
NH8B_3096
Hypothetical protein.
  
     0.577
NH8B_1230
Porin Gram-negative type.
  
     0.576
NH8B_4094
Porin Gram-negative type.
  
     0.571
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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