fliJ-2 protein (Pseudogulbenkiania sp. NH8B)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fliJ-2

Flagellar export protein FliJ. (147 aa)

Predicted Functional Partners:

fliI-2

0.797

fliH-2

0.797

fliG-2

0.797

fliF-2

0.797

fliE-2

0.780

fliK-3

0.592

fliD-2

0.580

fliL-2

0.553

fliS-2

0.551

NH8B_2896

0.532

Your Current Organism:

Pseudogulbenkiania sp. NH8B

NCBI taxonomy Id: 748280
Other names: P. sp. NH8B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NH8B_2896	fliD-2	NH8B_2896	NH8B_2898	Hypothetical protein.	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	0.738
NH8B_2896	fliE-2	NH8B_2896	NH8B_2904	Hypothetical protein.	Flagellar hook-basal body complex protein FliE.	0.514
NH8B_2896	fliF-2	NH8B_2896	NH8B_2903	Hypothetical protein.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.532
NH8B_2896	fliG-2	NH8B_2896	NH8B_2902	Hypothetical protein.	Flagellar motor switch protein FliG.	0.532
NH8B_2896	fliH-2	NH8B_2896	NH8B_2901	Hypothetical protein.	Flagellar assembly protein FliH.	0.532
NH8B_2896	fliI-2	NH8B_2896	NH8B_2900	Hypothetical protein.	Flagellar protein export ATPase FliI; K02412.	0.532
NH8B_2896	fliJ-2	NH8B_2896	NH8B_2899	Hypothetical protein.	Flagellar export protein FliJ.	0.532
NH8B_2896	fliK-3	NH8B_2896	NH8B_2895	Hypothetical protein.	Flagellar hook-length control protein FliK.	0.794
NH8B_2896	fliL-2	NH8B_2896	NH8B_2894	Hypothetical protein.	Flagellar basal body-associated protein FliL.	0.724
NH8B_2896	fliS-2	NH8B_2896	NH8B_2897	Hypothetical protein.	Flagellar protein FliS.	0.794
fliD-2	NH8B_2896	NH8B_2898	NH8B_2896	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Hypothetical protein.	0.738
fliD-2	fliE-2	NH8B_2898	NH8B_2904	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar hook-basal body complex protein FliE.	0.981
fliD-2	fliF-2	NH8B_2898	NH8B_2903	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.	0.983
fliD-2	fliG-2	NH8B_2898	NH8B_2902	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar motor switch protein FliG.	0.982
fliD-2	fliH-2	NH8B_2898	NH8B_2901	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar assembly protein FliH.	0.985
fliD-2	fliI-2	NH8B_2898	NH8B_2900	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar protein export ATPase FliI; K02412.	0.954
fliD-2	fliJ-2	NH8B_2898	NH8B_2899	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar export protein FliJ.	0.580
fliD-2	fliK-3	NH8B_2898	NH8B_2895	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar hook-length control protein FliK.	0.970
fliD-2	fliL-2	NH8B_2898	NH8B_2894	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar basal body-associated protein FliL.	0.927
fliD-2	fliS-2	NH8B_2898	NH8B_2897	Flagellar hook-associated protein FliD; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.	Flagellar protein FliS.	0.990