STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NH8B_3486Glycerate dehydrogenase; K00018; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (316 aa)    
Predicted Functional Partners:
NH8B_0252
Hydroxypyruvate reductase; K00050.
 
 0.948
glxK
Glycerate kinase; K00865; Belongs to the glycerate kinase type-1 family.
 
  
 0.930
glcB
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.925
NH8B_0837
Isocitrate lyase; K01637.
     
 0.917
gph
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
 
  
  0.917
NH8B_2960
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding.
 
  
0.914
NH8B_0113
KHG/KDPG aldolase; K01625.
    
 0.910
NH8B_0255
Hydroxypyruvate isomerase; K01816; Belongs to the hyi family.
   
 
 0.907
NH8B_0254
2-hydroxy-3-oxopropionate reductase; K00042.
    
 0.905
NH8B_0256
Glyoxylate carboligase; K01608; Belongs to the TPP enzyme family.
    
 0.902
Your Current Organism:
Pseudogulbenkiania sp. NH8B
NCBI taxonomy Id: 748280
Other names: P. sp. NH8B
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