NH8B_3752 protein (Pseudogulbenkiania sp. NH8B)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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Experiments

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[Homology]

Score

NH8B_3752

Amino acid ABC transporter, periplasmic amino acid-binding protein. (262 aa)

Predicted Functional Partners:

NH8B_3750

0.992

NH8B_3751

0.991

NH8B_3753

0.931

NH8B_3571

0.881

NH8B_2227

0.836

NH8B_3113

0.813

NH8B_4010

0.813

NH8B_3114

0.796

NH8B_2138

0.793

NH8B_4080

0.793

Your Current Organism:

Pseudogulbenkiania sp. NH8B

NCBI taxonomy Id: 748280
Other names: P. sp. NH8B

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
NH8B_2138	NH8B_2227	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.513
NH8B_2138	NH8B_3114	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.669
NH8B_2138	NH8B_3571	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.504
NH8B_2138	NH8B_3750	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.666
NH8B_2138	NH8B_3751	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.444
NH8B_2138	NH8B_3752	Polar amino acid ABC transporter, permease protein.	Amino acid ABC transporter, periplasmic amino acid-binding protein.	0.793
NH8B_2138	NH8B_3753	Polar amino acid ABC transporter, permease protein.	Amino acid ABC transporter, ATP-binding protein; K02028.	0.838
NH8B_2138	NH8B_4010	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.542
NH8B_2138	NH8B_4080	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.900
NH8B_2227	NH8B_2138	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.513
NH8B_2227	NH8B_3113	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.523
NH8B_2227	NH8B_3114	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, inner membrane subunit.	0.516
NH8B_2227	NH8B_3571	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.470
NH8B_2227	NH8B_3750	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.531
NH8B_2227	NH8B_3751	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.527
NH8B_2227	NH8B_3752	Polar amino acid ABC transporter, permease protein.	Amino acid ABC transporter, periplasmic amino acid-binding protein.	0.836
NH8B_2227	NH8B_3753	Polar amino acid ABC transporter, permease protein.	Amino acid ABC transporter, ATP-binding protein; K02028.	0.749
NH8B_2227	NH8B_4010	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.669
NH8B_2227	NH8B_4080	Polar amino acid ABC transporter, permease protein.	Polar amino acid ABC transporter, permease protein.	0.519
NH8B_3113	NH8B_2227	Polar amino acid ABC transporter, inner membrane subunit.	Polar amino acid ABC transporter, permease protein.	0.523