STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40091.1Putative ATPase; PFAM: Domain of unknown function DUF87. (615 aa)    
Predicted Functional Partners:
AGB40089.1
NurA domain-containing protein; PFAM: NurA domain.
 
 
 
 0.970
AGB41541.1
Hypothetical protein.
 
   
 0.818
AGB41542.1
DNA repair exonuclease.
 
   
 0.817
AGB41539.1
Hypothetical protein.
  
     0.774
AGB40092.1
PFAM: HAMP domain; Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.578
AGB40090.1
PFAM: HNH endonuclease.
  
  
 0.566
AGB42184.1
Glutaredoxin family protein, arsenate reductase; PFAM: Redoxin.
 
     0.559
metG
Protein containing C-terminal region/beta chain of methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.535
AGB41180.1
Methenyl tetrahydrofolate cyclohydrolase; PFAM: Virulence factor EsxB; Formiminotransferase-cyclodeaminase.
  
     0.473
AGB41822.1
PFAM: Competence protein; Metallo-beta-lactamase superfamily; TIGRFAM: ComEC/Rec2-related protein; DNA internalization-related competence protein ComEC/Rec2.
 
     0.433
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.