STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40125.1Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysaccharide biosynthesis protein; TIGRFAM: stage V sporulation protein B. (534 aa)    
Predicted Functional Partners:
AGB40126.1
MazG family protein; PFAM: Tetrapyrrole (Corrin/Porphyrin) Methylases; MazG nucleotide pyrophosphohydrolase domain; TIGRFAM: MazG family protein.
  
    0.848
AGB40127.1
PFAM: D-alanyl-D-alanine carboxypeptidase; Penicillin-binding protein 5, C-terminal domain; Belongs to the peptidase S11 family.
       0.759
AGB41961.1
PFAM: Bacterial protein of unknown function (DUF965); Belongs to the UPF0297 family.
  
     0.708
AGB42314.1
PFAM: Outer membrane protein (OmpH-like); Protein of unknown function (DUF3153).
  
     0.666
AGB40185.1
RNA polymerase sigma-H factor; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma-H factor.
  
    0.634
AGB41780.1
Putative SAM-dependent methyltransferase; PFAM: Family of unknown function (DUF633).
  
     0.594
AGB42484.1
PFAM: Bacterial protein of unknown function (DUF951).
  
     0.553
AGB40124.1
Stage V sporulation protein T; PFAM: SpoVT / AbrB like domain; TIGRFAM: looped-hinge helix DNA binding domain, AbrB family; stage V sporulation protein T.
     
 0.551
AGB40597.1
Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.534
AGB40521.1
Metal-dependent protease with possible chaperone activity; PFAM: Glycoprotease family; TIGRFAM: metallohydrolase, glycoprotease/Kae1 family.
  
     0.487
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.