STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40317.1TIGR00268 family protein; PFAM: Asparagine synthase; TIGRFAM: TIGR00268 family protein. (276 aa)    
Predicted Functional Partners:
AGB40318.1
NCAIR mutase-like protein; PFAM: AIR carboxylase.
 
 
 0.994
AGB41619.1
PFAM: Uncharacterized conserved protein (DUF2088).
 
  
 0.883
AGB41692.1
ABC-type Co2+ transport system, permease component; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM.
 
    0.758
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
 
    0.734
AGB41690.1
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
  
    0.699
AGB41777.1
Ribonuclease HI; PFAM: RNase H.
 
      0.691
AGB40316.1
Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; Transcriptional regulator.
       0.589
AGB42157.1
Hypothetical protein; PFAM: Domain of unknown function (DUF362).
 
     0.572
AGB41691.1
Hypothetical protein.
  
    0.556
AGB40901.1
PFAM: Aldo/keto reductase family.
 
    0.473
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.