STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40379.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
AGB40378.1
Hypothetical protein.
  
  
 0.842
AGB41231.1
PFAM: Protein of unknown function (DUF1657).
  
     0.764
AGB41232.1
PFAM: Protein of unknown function (DUF1657).
  
     0.764
AGB40588.1
PFAM: Protein of unknown function (DUF2953).
  
     0.744
AGB40511.1
PFAM: Stage III sporulation protein AE (spore_III_AE); TIGRFAM: stage III sporulation protein AE.
  
     0.717
AGB41158.1
PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ.
  
   
 0.714
AGB40381.1
Phosphatidylglycerophosphatase A-like protein; PFAM: Phosphatidylglycerophosphatase A.
 
     0.709
AGB40426.1
Putative sporulation protein YtaF; Probably functions as a manganese efflux pump.
  
     0.696
AGB41535.1
Hypothetical protein.
  
     0.696
AGB40554.1
Stage II sporulation protein M; PFAM: Reticulon; Integral membrane protein DUF95; TIGRFAM: stage II sporulation protein M.
  
     0.692
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.