STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40569.1Hypothetical protein. (187 aa)    
Predicted Functional Partners:
AGB40567.1
PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
  
  
 0.854
AGB40566.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
  
  
 0.824
AGB40571.1
Hypothetical protein; PFAM: CoA enzyme activase uncharacterised domain (DUF2229).
 
     0.820
AGB40572.1
Hypothetical protein; PFAM: CoA enzyme activase uncharacterised domain (DUF2229).
 
     0.814
AGB40570.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
    0.812
AGB40573.1
PFAM: BadF/BadG/BcrA/BcrD ATPase family; TIGRFAM: CoA-substrate-specific enzyme activase, putative.
       0.789
AGB40568.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE.
     
 0.782
AGB40565.1
Hypothetical protein.
 
  
 0.719
AGB41231.1
PFAM: Protein of unknown function (DUF1657).
  
     0.604
AGB41232.1
PFAM: Protein of unknown function (DUF1657).
  
     0.603
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.