STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40614.1PFAM: Carbohydrate binding domain (family 25). (98 aa)    
Predicted Functional Partners:
AGB40553.1
Hypothetical protein.
  
     0.742
AGB40615.1
PFAM: Manganese containing catalase.
 
    0.738
AGB41968.1
Hypothetical protein; PFAM: NIF3 (NGG1p interacting factor 3).
  
     0.658
AGB41092.1
Hypothetical protein.
  
     0.651
AGB40481.1
Fe2+ transport system protein A; PFAM: FeoA domain.
  
     0.646
AGB40716.1
Hypothetical protein.
  
     0.630
AGB40477.1
Fe2+ transport system protein A; PFAM: FeoA domain.
  
     0.625
AGB40383.1
PFAM: Tryptophan RNA-binding attenuator protein.
  
     0.592
AGB41452.1
PFAM: Protein of unknown function (DUF2619).
  
     0.563
AGB40915.1
PFAM: Archaeal protein of unknown function (DUF911); TIGRFAM: CRISPR-associated protein Cas4/Csa1, subtype I-A/APERN.
  
     0.554
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.