STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40691.1PFAM: PRC-barrel domain; TIGRFAM: sporulation protein, YlmC/YmxH family. (86 aa)    
Predicted Functional Partners:
AGB40704.1
Protease subunit of ATP-dependent protease; PFAM: Clp protease.
 
     0.804
AGB40566.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
  
    0.781
AGB42429.1
PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
 
     0.774
AGB41625.1
PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
 
     0.771
AGB41158.1
PFAM: Nucleoside recognition; TIGRFAM: sporulation integral membrane protein YlbJ.
  
     0.762
AGB42326.1
PFAM: Stage III sporulation protein D; TIGRFAM: sporulation transcriptional regulator SpoIIID.
  
     0.761
AGB40147.1
PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: stage II sporulation protein E.
  
     0.755
AGB40507.1
PFAM: Type II/IV secretion system protein; TIGRFAM: stage III sporulation protein AA.
  
    0.755
AGB40510.1
PFAM: Stage III sporulation protein AC/AD protein family; TIGRFAM: stage III sporulation protein AD.
  
     0.754
AGB41696.1
RNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.754
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.