STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40741.1Putative membrane protein; PFAM: Protein of unknown function (DUF421). (243 aa)    
Predicted Functional Partners:
AGB40740.1
Hypothetical protein.
 
     0.815
AGB40742.1
Copper/silver-translocating P-type ATPase; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC.
       0.495
AGB42433.1
Germination protein, Ger(X)C family; PFAM: Spore germination B3/ GerAC like, C-terminal; TIGRFAM: germination protein, Ger(x)C family.
 
  
 0.493
AGB40568.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AE.
 
  
 0.485
AGB40743.1
Hypothetical protein; PFAM: Uncharacterised BCR, COG1937.
       0.464
AGB40566.1
PFAM: SpoVA protein; TIGRFAM: stage V sporulation protein AC.
 
    0.462
AGB42434.1
PFAM: Bacillus/Clostridium GerA spore germination protein.
 
  
 0.445
AGB40567.1
PFAM: Stage V sporulation protein AD (SpoVAD); TIGRFAM: stage V sporulation protein AD.
 
  
 0.438
AGB41964.1
PFAM: Sporulation protein YunB (Spo_YunB); TIGRFAM: sporulation protein YunB.
  
     0.427
AGB40589.1
PFAM: Sporulation protein YtfJ (Spore_YtfJ); TIGRFAM: sporulation protein YtfJ.
  
     0.416
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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