STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40774.1Hypothetical protein. (392 aa)    
Predicted Functional Partners:
AGB41729.1
PFAM: NifU-like N terminal domain; TIGRFAM: FeS cluster assembly scaffold protein NifU, Clostridium type.
  
  
 0.756
AGB40332.1
Selenocysteine lyase; PFAM: Aminotransferase class-V.
  
 
 0.583
AGB41017.1
TIGRFAM: selenium-dependent molybdenum hydroxylase system protein, YqeB family.
  
 
 0.583
AGB42037.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
  
 
 0.583
AGB42065.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
  
 
 0.583
AGB42493.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase family protein.
  
 
 0.583
AGB40775.1
PMT family glycosyltransferase, 4-amino-4-deoxy-L-arabinose transferase; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase; manually curated; non-canonical start codon.
       0.581
AGB40773.1
Hypothetical protein.
      
0.578
AGB40772.1
Hypothetical protein.
  
    0.462
AGB40776.1
ABC-type Fe3+ transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
  
 0.406
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.