STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40889.1PFAM: THUMP domain; TIGRFAM: TIGR01213 family protein. (390 aa)    
Predicted Functional Partners:
AGB40890.1
PFAM: ATPase family associated with various cellular activities (AAA).
       0.752
AGB40891.1
PFAM: Protein of unknown function DUF58.
       0.752
AGB40892.1
Hypothetical protein.
       0.752
AGB40893.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
     0.701
AGB40888.1
TIGRFAM: phosphoesterase, MJ0936 family.
       0.574
AGB40894.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
       0.533
AGB40895.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
       0.513
AGB40887.1
PFAM: GGDEF domain; GAF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
       0.511
AGB41689.1
ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.
  
     0.510
hisS
histidyl-tRNA synthetase/ATP phosphoribosyltransferase, regulatory subunit; Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine.
  
     0.509
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.