STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40893.1ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter. (229 aa)    
Predicted Functional Partners:
AGB41304.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 0.996
AGB40894.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.991
AGB40895.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.990
AGB40575.1
Outer membrane lipoprotein-sorting protein; PFAM: Protein of unknown function (DUF1329).
 
 
 
 0.865
AGB40896.1
Negative regulator of sigma E activity; PFAM: Protein of unknown function (DUF1329).
 
     0.751
AGB40889.1
PFAM: THUMP domain; TIGRFAM: TIGR01213 family protein.
 
     0.701
AGB41306.1
TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.678
AGB40909.1
Glutaredoxin, GrxC family; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Glutaredoxin; TIGRFAM: thioredoxin-disulfide reductase; Glutaredoxin, GrxC family.
  
     0.630
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
 
     0.627
AGB40891.1
PFAM: Protein of unknown function DUF58.
  
    0.612
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.