STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40904.1Hypothetical protein. (136 aa)    
Predicted Functional Partners:
AGB40901.1
PFAM: Aldo/keto reductase family.
       0.757
AGB40902.1
Membrane-bound serine protease (ClpP class); PFAM: Clp protease; NfeD-like.
       0.757
AGB40903.1
Hypothetical protein; PFAM: SigmaW regulon antibacterial.
       0.757
AGB40900.1
PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
       0.566
AGB40905.1
Putative membrane protein; PFAM: Protein of unknown function (DUF421).
       0.453
AGB40899.1
Hypothetical protein.
       0.409
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.