STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40932.1Hypothetical protein; Manually curated; non-canonical start codon. (188 aa)    
Predicted Functional Partners:
AGB40931.1
PFAM: GTPase of unknown function.
 
     0.958
AGB40930.1
PFAM: ATPase family associated with various cellular activities (AAA); TIGRFAM: stage V sporulation protein K.
 
     0.854
AGB40933.1
Hypothetical protein.
       0.752
AGB41448.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
     0.671
hfq
RNA chaperone Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
       0.628
AGB40108.1
Putative glycosyl hydrolase; PFAM: LysM domain.
  
     0.619
AGB41532.1
PFAM: Protein of unknown function (DUF3189).
  
     0.616
ftsL
Septum formation initiator; Essential cell division protein; Belongs to the FtsL family.
  
     0.597
AGB41416.1
LysM domain-containing protein; PFAM: LysM domain.
  
     0.579
AGB42184.1
Glutaredoxin family protein, arsenate reductase; PFAM: Redoxin.
  
     0.557
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.