Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB40943.1Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family. (205 aa)    
Predicted Functional Partners:
AGB40944.1
PFAM: Biopolymer transport protein ExbD/TolR.
 
 
 0.998
AGB40945.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
 0.990
AGB40947.1
Putative S-layer protein; PFAM: S-layer homology domain.
 
   
 0.905
AGB40946.1
Alpha-galactosidase family protein; PFAM: Cohesin domain.
 
     0.889
AGB42286.1
ABC-type (unclassified) transport system, ATPase component; PFAM: ABC transporter.
 
   
 0.767
AGB42317.1
PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
   
 0.754
AGB40942.1
Putative metal-dependent phosphoesterase, PHP family; PFAM: PHP domain.
       0.746
AGB41516.1
PFAM: Outer membrane efflux protein.
  
   
 0.745
AGB40948.1
Cell wall hydrolyses involved in spore germination; PFAM: Cell Wall Hydrolase.
       0.732
AGB42285.1
PFAM: Predicted permease YjgP/YjgQ family.
  
     0.721
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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