STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB40944.1PFAM: Biopolymer transport protein ExbD/TolR. (136 aa)    
Predicted Functional Partners:
AGB40943.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.998
AGB40945.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
 
 0.995
AGB40947.1
Putative S-layer protein; PFAM: S-layer homology domain.
 
   
 0.894
AGB40946.1
Alpha-galactosidase family protein; PFAM: Cohesin domain.
 
     0.876
ribBA
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 
 0.751
AGB40942.1
Putative metal-dependent phosphoesterase, PHP family; PFAM: PHP domain.
       0.746
AGB40948.1
Cell wall hydrolyses involved in spore germination; PFAM: Cell Wall Hydrolase.
       0.740
AGB42308.1
PFAM: Predicted permease YjgP/YjgQ family.
  
     0.667
AGB42317.1
PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.648
AGB41516.1
PFAM: Outer membrane efflux protein.
  
  
 0.638
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.