Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB40947.1Putative S-layer protein; PFAM: S-layer homology domain. (221 aa)    
Predicted Functional Partners:
AGB40946.1
Alpha-galactosidase family protein; PFAM: Cohesin domain.
 
     0.927
AGB40943.1
Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.
 
   
 0.905
AGB40945.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
   
 0.894
AGB40944.1
PFAM: Biopolymer transport protein ExbD/TolR.
 
   
 0.882
AGB42283.1
Hypothetical protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.774
AGB42284.1
PFAM: Protein of unknown function (DUF3084).
  
     0.774
AGB40948.1
Cell wall hydrolyses involved in spore germination; PFAM: Cell Wall Hydrolase.
       0.772
AGB42285.1
PFAM: Predicted permease YjgP/YjgQ family.
  
     0.771
AGB42308.1
PFAM: Predicted permease YjgP/YjgQ family.
  
     0.766
AGB42316.1
PFAM: Outer membrane protein (OmpH-like).
  
     0.766
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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