STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41043.1Hypothetical protein. (869 aa)    
Predicted Functional Partners:
AGB41044.1
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase.
 
 
 0.999
AGB41237.1
PFAM: PGAP1-like protein.
  
     0.745
AGB40946.1
Alpha-galactosidase family protein; PFAM: Cohesin domain.
  
     0.731
AGB41175.1
Hypothetical protein; PFAM: Cupin domain.
  
     0.712
AGB40945.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
     0.704
AGB41561.1
PFAM: Predicted metal-binding protein (DUF2103).
  
     0.704
AGB41385.1
PFAM: Protein kinase domain.
  
     0.621
AGB42027.1
Transcriptional antiterminator; PFAM: HTH domain; Mga helix-turn-helix domain; PRD domain; PTS system, Lactose/Cellobiose specific IIB subunit; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
  
     0.609
AGB41958.1
Hypothetical protein.
  
     0.602
AGB41042.1
Hypothetical protein.
       0.563
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.