STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41160.1Hypothetical protein. (373 aa)    
Predicted Functional Partners:
AGB42479.1
Hypothetical protein.
  
     0.715
AGB41983.1
PFAM: YtxC-like family; TIGRFAM: putative sporulation protein YtxC.
  
     0.636
AGB42425.1
Hypothetical protein.
  
    0.622
AGB42340.1
PFAM: ATP synthase I chain.
  
     0.607
AGB41113.1
PFAM: Protein of unknown function (DUF3231); Coat F domain.
  
     0.588
AGB40360.1
Hypothetical protein; PFAM: Domain of unknown function (DUF362).
  
     0.567
AGB41161.1
Putative permease; PFAM: Na+/H+ antiporter family.
 
     0.548
AGB42372.1
Hypothetical protein.
  
     0.505
AGB40989.1
Flavodoxin.
  
     0.504
AGB41625.1
PFAM: Stage II sporulation protein R (spore_II_R); TIGRFAM: stage II sporulation protein R.
  
     0.482
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.