STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41175.1Hypothetical protein; PFAM: Cupin domain. (105 aa)    
Predicted Functional Partners:
AGB41174.1
Transcriptional regulator; PFAM: YsiA-like protein, C-terminal region; Bacterial regulatory proteins, tetR family.
 
  
 0.815
AGB40945.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
    0.742
AGB40946.1
Alpha-galactosidase family protein; PFAM: Cohesin domain.
  
     0.724
AGB41561.1
PFAM: Predicted metal-binding protein (DUF2103).
  
     0.724
AGB41043.1
Hypothetical protein.
  
     0.712
AGB41916.1
PFAM: Sporulation related domain.
  
     0.686
AGB41044.1
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase.
  
     0.683
AGB40814.1
Hypothetical protein; TIGRFAM: putative membrane fusion protein.
  
    0.679
ftsL
Septum formation initiator; Essential cell division protein; Belongs to the FtsL family.
  
     0.665
AGB41177.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
     0.616
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.