STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41440.1K+ transport system, NAD-binding component; PFAM: TrkA-N domain; Ion channel. (336 aa)    
Predicted Functional Partners:
AGB41976.1
PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
  
 
 0.742
AGB41978.1
PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
  
 
 0.742
AGB41441.1
Bacterioferritin (cytochrome b1); PFAM: Ferritin-like domain; Belongs to the Dps family.
       0.701
AGB41439.1
Putative ATP-dependent protease; PFAM: Lon protease (S16) C-terminal proteolytic domain; TIGRFAM: lon-related putative ATP-dependent protease.
       0.578
AGB40851.1
Ribosomal RNA small subunit methyltransferase RsmB/transcription antitermination factor NusB; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons. Belongs to the NusB family.
  
   0.565
AGB41442.1
Flavin-dependent dehydrogenase; PFAM: Glucose inhibited division protein A.
       0.481
AGB41443.1
Ferredoxin-like protein.
       0.481
AGB41438.1
PFAM: HD domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
       0.470
AGB41444.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily.
       0.469
AGB41466.1
PFAM: Cation transport protein; TIGRFAM: potassium uptake protein, TrkH family.
  
 
 0.441
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.