STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41689.1ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter. (269 aa)    
Predicted Functional Partners:
AGB41690.1
ABC-type cobalt transport system, permease component CbiQ; PFAM: Cobalt transport protein.
 
 0.996
AGB41692.1
ABC-type Co2+ transport system, permease component; PFAM: Cobalt uptake substrate-specific transmembrane region; TIGRFAM: cobalamin biosynthesis protein CbiM.
 
 0.994
AGB41691.1
Hypothetical protein.
 
 0.980
ecfT
ABC-type cobalt transport system, permease component CbiQ; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 0.979
AGB40253.1
Hypothetical protein; PFAM: BioY family.
   
 
 0.823
AGB40155.1
Putative membrane protein.
   
 
 0.800
AGB41688.1
Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
     
 0.739
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
 
    0.615
AGB41233.1
Putative membrane protein; PFAM: Protein of unknown function (DUF1393).
   
 
 0.575
AGB40909.1
Glutaredoxin, GrxC family; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Glutaredoxin; TIGRFAM: thioredoxin-disulfide reductase; Glutaredoxin, GrxC family.
  
     0.572
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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