STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41719.1PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM. (345 aa)    
Predicted Functional Partners:
AGB41718.1
PFAM: Fimbrial assembly protein (PilN).
  
 
 0.967
AGB41723.1
Prepilin signal peptidase PulO-like peptidase; PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family.
 
  
 0.945
AGB41725.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain; TIGRFAM: general secretion pathway protein F; manually curated; non-canonical start codon.
 
 
 
 0.937
AGB41727.1
PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain; TIGRFAM: type IV-A pilus assembly ATPase PilB; general secretory pathway protein E.
 
 
 0.935
AGB41717.1
PFAM: Pilus assembly protein, PilO.
 
 
 0.919
AGB41726.1
PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT.
 
   
 0.912
AGB41724.1
PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: general secretion pathway protein G; prepilin-type N-terminal cleavage/methylation domain.
 
  
 0.906
AGB41715.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; LysM domain; Bacterial type II and III secretion system protein.
 
  
 0.877
AGB40497.1
PFAM: Fimbrial assembly protein (PilN).
  
 
 0.863
AGB40491.1
Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain.
 
 
 
 0.860
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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