STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41819.1PFAM: Small, acid-soluble spore proteins, alpha/beta type. (106 aa)    
Predicted Functional Partners:
AGB41820.1
PFAM: Small, acid-soluble spore proteins, alpha/beta type.
 
    
0.642
AGB40704.1
Protease subunit of ATP-dependent protease; PFAM: Clp protease.
  
     0.613
AGB40513.1
TIGRFAM: stage III sporulation protein AG.
  
     0.593
AGB41816.1
PFAM: Membrane protein of unknown function.
  
    0.581
AGB41814.1
PFAM: Stage II sporulation protein P (SpoIIP); TIGRFAM: stage II sporulation protein P.
  
     0.577
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.549
AGB40541.1
PFAM: SpoIVB peptidase S55; TIGRFAM: stage IV sporulation protein B.
  
     0.515
AGB40514.1
Hypothetical protein.
  
   
 0.492
AGB41818.1
PFAM: DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit.
       0.491
AGB41552.1
Hypothetical protein.
  
     0.472
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.