STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB41901.1Transposase family protein; PFAM: Transposase DDE domain. (396 aa)    
Predicted Functional Partners:
AGB41051.1
PFAM: Domain of unknown function (DUF1788).
 
 
 0.769
AGB41053.1
Type I restriction-modification system methyltransferase subunit; PFAM: Eco57I restriction endonuclease.
 
  
 0.749
AGB42439.1
TIGRFAM: TIGR02688 family protein; conserved hypothetical protein.
 
  
 0.745
AGB41052.1
Hypothetical protein.
 
    0.741
AGB40299.1
DNA helicase, putative; PFAM: DbpA RNA binding domain; TIGRFAM: DNA helicase, putative.
  
    0.679
AGB40333.1
PFAM: Transposase IS116/IS110/IS902 family; Transposase.
  
     0.629
AGB41142.1
PFAM: Transposase IS116/IS110/IS902 family; Transposase.
  
     0.629
AGB41463.1
PFAM: Transposase IS116/IS110/IS902 family; Transposase.
  
     0.629
AGB41874.1
PFAM: Transposase IS116/IS110/IS902 family; Transposase.
  
     0.629
AGB41050.1
PFAM: Putative inner membrane protein (DUF1819).
 
    0.618
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.