STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB42004.1PFAM: Domain of unknown function (DUF2223). (292 aa)    
Predicted Functional Partners:
AGB41448.1
ABC-type sugar transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding protein.
  
     0.678
AGB42003.1
PFAM: Carbohydrate binding domain (family 25).
 
     0.666
AGB40946.1
Alpha-galactosidase family protein; PFAM: Cohesin domain.
  
     0.646
AGB41307.1
PFAM: Outer membrane efflux protein.
  
     0.606
AGB42005.1
Glycosidase; PFAM: Alpha amylase, catalytic domain.
    
 0.570
AGB42318.1
Hypothetical protein; PFAM: Family of unknown function (DUF490).
  
     0.550
AGB41299.1
Putative Fe-S oxidoreductase; PFAM: Radical SAM superfamily.
  
     0.545
AGB42038.1
Hypothetical protein.
  
     0.543
AGB40945.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
     0.540
AGB40947.1
Putative S-layer protein; PFAM: S-layer homology domain.
  
     0.522
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.