Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB42027.1Transcriptional antiterminator; PFAM: HTH domain; Mga helix-turn-helix domain; PRD domain; PTS system, Lactose/Cellobiose specific IIB subunit; Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2. (743 aa)    
Predicted Functional Partners:
AGB42028.1
Hypothetical protein; PFAM: PTS system sugar-specific permease component.
 
  
 0.895
AGB42029.1
Phosphotransferase system, galactitol-specific IIB component; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit.
 
  
 0.853
AGB40760.1
Hypothetical protein; PFAM: PTS system sugar-specific permease component.
 
  
 0.807
AGB42419.1
PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, fructose-specific, IIB component; PTS system, fructose subfamily, IIC component.
  
  
 0.779
AGB40759.1
Phosphotransferase system, galactitol-specific IIB component; PFAM: PTS system, Lactose/Cellobiose specific IIB subunit.
 
  
 0.777
AGB40290.1
PFAM: Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.
 
  
 0.740
AGB42194.1
PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, mannitol-specific IIC component.
 
  
 0.729
AGB40288.1
PFAM: Phosphotransferase system, EIIC; PTS system, Lactose/Cellobiose specific IIB subunit; TIGRFAM: PTS system, mannitol-specific IIC component.
 
  
 0.727
AGB41237.1
PFAM: PGAP1-like protein.
  
    0.685
AGB40802.1
PTS system, sucrose-specific IIBC component; PFAM: Phosphotransferase system, EIIC; phosphotransferase system, EIIB; TIGRFAM: PTS system, sucrose-specific IIBC component; PTS system, glucose-like IIB component.
  
 
 0.656
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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