Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB42031.1Hypothetical protein; Manually curated; non-canonical start codon. (147 aa)    
Predicted Functional Partners:
AGB42032.1
PFAM: Predicted membrane protein (DUF2078).
       0.732
AGB41131.1
Putative homoserine kinase type II (protein kinase fold); PFAM: Phosphotransferase enzyme family.
  
     0.722
AGB42270.1
Mn2+-dependent serine/threonine protein kinase; PFAM: Lipopolysaccharide kinase (Kdo/WaaP) family.
  
     0.644
AGB41116.1
PFAM: Inosine-uridine preferring nucleoside hydrolase.
  
     0.642
AGB42465.1
Hypothetical protein.
  
     0.618
AGB42471.1
Protein possibly involved in post-translational modification of quorum-sensing peptides; PFAM: Accessory gene regulator B.
  
     0.574
AGB41126.1
ABC-type spermidine/putrescine transport system, permease component I; PFAM: Binding-protein-dependent transport system inner membrane component.
  
     0.559
AGB41127.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component; manually curated; non-canonical start codon.
  
     0.548
AGB41561.1
PFAM: Predicted metal-binding protein (DUF2103).
  
     0.508
AGB41129.1
PFAM: Glycosyl transferase family 2.
  
     0.491
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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