Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AGB42045.1PFAM: Uncharacterized protein conserved in bacteria (DUF2128). (153 aa)    
Predicted Functional Partners:
AGB42044.1
DNA phosphorothioation system restriction enzyme; PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; TIGRFAM: DNA phosphorothioation system restriction enzyme.
       0.644
AGB42041.1
Hypothetical protein.
       0.625
AGB42042.1
TIGRFAM: DNA sulfur modification protein DndD.
       0.625
AGB42043.1
Hypothetical protein.
       0.625
AGB42046.1
PFAM: Protein of unknown function (DUF3006).
       0.437
AGB42047.1
Hypothetical protein.
       0.437
AGB42048.1
Putative secretion activating protein; PFAM: Predicted Peptidoglycan domain; Predicted lysozyme (DUF847).
       0.418
Your Current Organism:
Halobacteroides halobius
NCBI taxonomy Id: 748449
Other names: H. halobius DSM 5150, Halobacteroides halobius ATCC 35273, Halobacteroides halobius DSM 5150, Halobacteroides halobius MD-1, Halobacteroides halobius str. DSM 5150, Halobacteroides halobius strain DSM 5150
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